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UKKi019-B

NP0081-11

iPSC line

Not-for-profit fee: £1400 per vial
Immediately available for distribution*
*Once all legal and processing details completed
A CLIP contains information about a cell line including any specific third party obligations relating to, for example, licensing obligations or the donor consent which affect the use of the cell line.

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General#

Cell Line

hPSCreg name UKKi019-B
Alternative name(s)
NP0081-11
Cell line type Human induced pluripotent stem cell (hiPSC)
Similar lines
UKKi019-A
(NP0081-1A)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi019-C
(NP0081-12C)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi018-C
(NP0080-8B)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi018-A
(NP0080-2B)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi018-B
(NP0080-6A)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi023-A
(NP0126-1)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi023-B
(NP0126-5)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi023-C
(NP0126-6)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi009-B
(NP0011-19)
Donor's gene variants:
KCNH2
Donor diseases:
Familial long QT syndrome
UKKi016-A
(NP0078-10)
Donor's gene variants:
KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi029-A
(NP0077-6D)
Donor's gene variants:
KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi034-C
(NP0079-C, NP0079-16H)
Donor's gene variants:
KCNQ1, KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi029-B
(NP0077-16E)
Donor's gene variants:
KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi029-C
(NP0077-18C)
Donor's gene variants:
KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi034-A
(NP0079-A, NP0079-7B)
Donor's gene variants:
KCNQ1, KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi034-B
(NP0079-B, NP0079-15B)
Donor's gene variants:
KCNQ1, KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi016-B
(NP0078-12)
Donor's gene variants:
KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi016-C
(NP0078-13)
Donor's gene variants:
KCNQ1
Donor diseases:
Familial long QT syndrome
UKKi008-A
(NP0016-3)
Donor's gene variants:
SCN5A
Donor diseases:
Familial long QT syndrome
STBCi096-A
(BPC340-03-06)
Donor diseases:
Familial long QT syndrome

Provider

Depositor Klinikum der Universität zu Köln (UKK)
Owner Institute for Neurophysiology, Medical Faculty
Distributors
EBiSC
Derivation country Germany

External Databases

hPSCreg UKKi019-B
BioSamples SAMEA17626168
Cellosaurus CVCL_LD29
Wikidata Q54990470

General Information

This EBiSC line can be used for:
Yes
Research use: allowed
Clinical use: no
Commercial use: no

Donor Information#

General Donor Information

Sex female
Age of donor (at collection) 20-24
Ethnicity caucasian / european

Phenotype and Disease related information (Donor)

Diseases A disease was diagnosed.
Disease variant: familial long QT syndrome 2, KCNH2, c. 1280 A>G; p.Tyr427Cys
The donor is a carrier of a disease-associated mutation and affected.
Synonyms
  • Congenital long QT syndrome
  • LQTS
Genetic variants
KCNH2 (target)
7q36.1
NM_000238.3:c.1280 A>G
NP_000229.1:p.Tyr427Cys
Heterozygous
Please explain briefly the supporting evidence
Is the medical history available upon request? yes
Is clinical information available? yes

Karyotyping (Donor)

Has the donor karyotype been analysed?
No

Other Genotyping (Donor)

Is there genome-wide genotyping or functional data available?
No

Donor Relations

Other cell lines of this donor

External Databases (Donor)

BioSamples SAMEA17625418

hIPSC Derivation#

General

Source cell type
A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood.
Age of donor (at collection) 20-24
Collected in 2016
Passage number reprogrammed 0

Reprogramming method

Vector type Non-integrating
Vector Sendai virus
Genes
Is reprogramming vector detectable?
No
Methods used
Immunostaining, PCR
Notes on reprogramming vector detection sendai virus absent
Files and images showing reprogramming vector expressed or silenced

Vector free reprogramming

Type of used vector free reprogramming factor(s)
None

Other

Selection criteria for clones morphology
Derived under xeno-free conditions
Yes
Derived under GMP?
No
Available as clinical grade?
No

Culture Conditions#

The following are the depositor culture conditions, they do not refer to any specific batch.
Surface coating Vitronectin
Feeder cells
No
Passage method Enzyme-free cell dissociation
EDTA
O2 Concentration 20 %
CO2 Concentration 5 %
Medium Essential 8™
Supplements
Essential 8 supplement 50x 10 ml
Essential 8 Flex supplement 50x 10 ml
Has Rock inhibitor (Y27632) been used at passage previously with this cell line?
No
Has Rock inhibitor (Y27632) been used at cryo previously with this cell line?
No
Has Rock inhibitor (Y27632) been used at thaw previously with this cell line?
No

Characterisation#

Analysis of Undifferentiated Cells
Marker Expressed Immunostaining RT-PCR Flow Cytometry Enzymatic Assay Expression Profiles
DNMT3b
Yes
FOXD3
Yes
NANOG
Yes
OCT 4
Yes
SOX2
Yes
SSEA-1
Yes
SSEA-4
Yes
TRA 1-80
Yes
CD90
Yes
Morphology pictures
morphology pictures of NP0081-11 before banking and of the thawing control
morphology pictures of NP0081-11 before banking and of the thawing control
morphology pictures of NP0081-11 before banking and of the thawing control
Differentiation Potency
Endoderm
Ont Id: UBERON_0000925
In vitro directed differentiation
Marker Expressed
SOX17
Yes
Morphology
expression of SOX17 in differentiated iPS cell line NP0081-11
Mesoderm
Ont Id: UBERON_0000926
In vitro directed differentiation
Marker Expressed
BRACHYURY
Yes
Morphology
expression of BRACHYURY in differentiated iPS cell line NP0081-11
Ectoderm
Ont Id: UBERON_0000924
In vitro directed differentiation
Marker Expressed
NES
Yes
Morphology
expression of NESTIN in differentiated iPS cell line NP0081-11

Microbiology / Virus Screening

HIV 1 Negative
HIV 2 Negative
Hepatitis B Negative
Hepatitis C Negative
Mycoplasma Negative

Sterility

Inoculation for microbiological growth No Contaminants Detected
Mycoplasma Not Detected
Viability Viable post-cryopreservation

Genotyping#

Karyotyping (Cell Line)

Has the cell line karyotype been analysed?
Yes
No larger chromosomal aberrations to be reported
Passage number: 38
Karyotyping method: Molecular karyotyping by SNP array

Other Genotyping (Cell Line)

Is there genome-wide genotyping or functional data available?
Yes
Whole genome sequencing
https://ega-archive.org/studies/EGAS00001002755
This cell line has undergone WGS using the Illumina HiSeq X platform at 30x coverage. Fastq files are stored at the European Genome Archive, users can apply for access to this data by submitting an application form to the EBiSC Data Access Committee https://ega-archive.org/dacs/EGAC00001000768